Attention: Data Proxy will be migrated from SWIFT to S3 storage at Friday, the 9th of May 2025 starting from 9pm CEST (my timezone). For more details, please join the rocket chat channel https://chat.ebrains.eu/channel/data-proxy-user-group


5th TVB in EBRAINS TVB-multiscale cosimulation hands-on session

Version 14.1 by dionperd on 2021/06/02 16:32

What can I find here?

  • A Jupyter notebook BasalGanglia.ipynb used for the hands-on session
  • A Jupyter notebook BasalHomeworkSolved.ipynb with all the solutions to the session, which will be posted right after the session is over.

Guide to run the use-case notebook

  1. Run the TVB-NEST app by browsing to https://tvb-nest.apps.hbp.eu/ and logging in with your EBRAINS account.
  2. Navigate to "ContributedNotebooks" folder, which offers persistent storage for EBRAINS users.
  3. You will need the notebook BasalGanglia.ipynb, the data folder basal_ganglia_conn, and the pictures folder pics, found in the drive folder "5thTVBinEBRAINSworkshop. All materials can also be found as a .zip file "HandsOn.zip" attached to the current page (scroll down to find it).
  4. The easiest way to get the above materials is to upload "HandsOn.zip" to "ContributedNotebooks" folder, and run the command
    ! unzip ./Homework.zip
    on a cell of a new notebook, from within the same folder.
  5. Finally, navigate inside the decompressed HandsOn folder and run the notebook BasalGanglia.ipynb. Your results will be saved in your personal drive space and can be found in the "ContributedNotebooks" folder whenever you log in again to the app.