Attention: The Collaboratory IAM will down for up to 1 hour on Monday, the 7th of July 2025 starting from 5pm CEST (my timezone) for up to 1 hour. Any and all services, which require a user login with an EBRAINS account, will be un-available during that time


TVB-multiscale-cosim_McGillSummerSchool_06-2021

Version 15.1 by dionperd on 2021/05/17 10:57

Course on TVB-multiscale cosimulation

McGill University "Summer School in Nonlinear Dynamics for the Life Sciences with Applications to Neuroscience and Psychology" (June 2021)

What can I find here?

  • Use case of a TVB - Spiking Basal Ganglia cosimulation
  • Homework materials

Who has access?

Everybody with an EBRAINS account.

Guide to run the use-case notebook

  1. Run the TVB-NEST app by browsing to https://tvb-nest.apps.hbp.eu/ and logging in with your EBRAINS account.
  2. Navigate to "ContributedNotebooks" folder and upload the notebook "BasalGangliaHomework.ipynb" and the data folder "basal_ganglia_conn". Both can be found either in the drive folder "Lecture", or in the attachment .zip file "Lecture.zip".
  3. Now you can run the notebook.