TVB-Multiscale: Deep Brain Stimulation TVB-ANNarchy use case demonstration & TVB-NETPYNE demonstration

November 24th, 2022

TVB-multiscale JupyterHub apps are now deprecated! See: https://wiki.ebrains.eu/bin/view/Collabs/the-virtual-brain-multiscale/ about how to run TVB-multiscale (TVB-NEST, TVB-NetPyNE (NEURON), TVB-ANNarchy) on EBRAINS!

What can I find here?

• Presentation slides for the TVB-Multiscale and for DBS demonstration with TVB-ANNarchy.
• Presentation slides for the TVB-NETPYNE demonstration.

Guide to run the use-case notebooks

1. Run the EBRAINS TVB-Multiscale app by browsing to https://tvb-multiscale.apps.hbp.eu/ and logging in with your EBRAINS account. (The first time you log-in, you might need to try several times by refreshing the page, until it works for you!)
2. Navigate to "TVB-Multiscale-Examples/notebooks" folder, and copy its contents to the "Contributed-Notebooks" folder, which offers user-specific persistent storage.
3. Run the TVB-ANNarchy_DBS_BasalGanglia.ipynb notebook for TVB-ANNarchy DBS Co-Simulation and TVB-NETPYNE_RedWongWang.ipynb for the TVB-NETPYNE Co-Simulation