Wiki source code of EBRAINS_CodeJam2022
Last modified by dionperd on 2024/04/08 12:55
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| 3 | (% class="box" style="text-align: center;" %) | ||
| 4 | ((( | ||
| 5 | [[**HBP/EBRAINS CodeJam2022**>>https://www.humanbrainproject.eu/en/follow-hbp/events/ebrainshbp-codejam-codejam-12]] | ||
| 6 | ))) | ||
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| 8 | (% style="text-align: center;" %) | ||
| 9 | === **TVB-Multiscale: Deep Brain Stimulation TVB-ANNarchy use case demonstration & TVB-NETPYNE demonstration** === | ||
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| 11 | November 24th, 2022 | ||
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| 13 | == == | ||
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| 15 | (% class="wikigeneratedid" id="HTVB-multiscaleJupyterHubappsarenowdeprecated21See:A0https:2F2Fwiki.ebrains.eu2Fbin2Fview2FCollabs2Fthe-virtual-brain-multiscale2FA0abouthowtorunTVB-multiscale28TVB-NEST2CTVB-NetPyNE28NEURON292CTVB-ANNarchy29onEBRAINS21" %) | ||
| 16 | (% style="color:#e74c3c" %)**TVB-multiscale JupyterHub apps are now deprecated! See:**(%%) **[[https:~~/~~/wiki.ebrains.eu/bin/view/Collabs/the-virtual-brain-multiscale/>>url:https://wiki.ebrains.eu/bin/view/Collabs/the-virtual-brain-multiscale/]] (% style="color:#e74c3c" %)about how to run TVB-multiscale (TVB-NEST, TVB-NetPyNE (NEURON), TVB-ANNarchy) on EBRAINS!(%%)** | ||
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| 19 | === What can I find here? === | ||
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| 21 | * Presentation slides for the [[TVB-Multiscale and for DBS demonstration with TVB-ANNarchy>>attach:2022-11-24_TVB-multiscale_CodeJam2022.pdf]]. | ||
| 22 | * Presentation slides for the [[TVB-NETPYNE demonstration>>attach:Ebrains_TVB-NetPyNE_slides.pdf]]. | ||
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| 24 | === Guide to run the use-case notebooks === | ||
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| 26 | 1. Run the EBRAINS TVB-Multiscale app by browsing to [[https:~~/~~/tvb-multiscale.apps.hbp.eu/>>url:https://tvb-multiscale.apps.hbp.eu/]] and logging in with your EBRAINS account. (The first time you log-in, you might need to try several times by refreshing the page, until it works for you!) | ||
| 27 | 1. Navigate to "TVB-Multiscale-Examples/notebooks" folder, and copy its contents to the "Contributed-Notebooks" folder, which offers user-specific persistent storage. | ||
| 28 | 1. Run the TVB-ANNarchy_DBS_BasalGanglia.ipynb notebook for TVB-ANNarchy DBS Co-Simulation and TVB-NETPYNE_RedWongWang.ipynb for the TVB-NETPYNE Co-Simulation |