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Changes for page EBRAINS_CodeJam2022

Last modified by dionperd on 2024/04/08 12:55
From version 13.1
edited by dionperd
on 2022/11/08 18:54
Change comment: Uploaded new attachment "2022-11-09_TVB-multiscale_SimulateWIthEbrains.pdf", version 1.1
To version 22.1
edited by dionperd
on 2022/11/22 17:01
Change comment: There is no comment for this version

Summary

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1 -Simulate with EBRAINS TVB-multiscale workshop presentation
1 +EBRAINS_CodeJam2022
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1 -[[image:SimulateWithEBRAINS.jpg]]
1 +
2 2  
3 +(% style="text-align: center;" %)
4 +== **TVB-Multiscale: Deep Brain Stimulation use case demonstration** ==
3 3  
6 +(% style="text-align: center;" %)
7 +== **&** ==
4 4  
5 -== **TVB-Multiscale: Deep Brain Stimulation use case demonstration** ==
9 +(% style="text-align: center;" %)
10 +== **TVB-NETPYNE demonstration** ==
6 6  
7 -November 9th, 2022
12 +November 24th, 2022
8 8  
9 9  
10 10  
11 11  === What can I find here? ===
12 12  
13 -* [[Presentation slides>>attach:simulate_on_Ebrains-09112022-tvb-multiscale_DP.pdf]] from the workshop's lecture.
14 -* The notebook ([[SimulateWithEBRAINS.zip>>path:https://wiki.ebrains.eu/bin/download/Collabs/tvb-multiscale-cosim-mcgillsummerschool/Simulate%20with%20EBRAINS%20TVB-multiscale%20workshop%20presentation/WebHome/SimulateWithEBRAINS.zip?rev=1.1]]) demonstrated during the workshop.
18 +* Presentation slides for the [[TVB-Multiscale and for DBS demonstration with TVB-ANNarchy>>attach:2022-11-24_TVB-multiscale_CodeJam2022.pdf]].
19 +* Presentation slides for the [[TVB-NETPYNE demonstration>>attach:Ebrains_TVB-NetPyNE_slides.pdf]].
15 15  
16 -=== Guide to run the use-case notebook ===
21 +=== Guide to run the use-case notebooks ===
17 17  
18 18  1. Run the EBRAINS TVB-Multiscale app by browsing to [[https:~~/~~/tvb-multiscale.apps.hbp.eu/>>url:https://tvb-multiscale.apps.hbp.eu/]] and logging in with your EBRAINS account. (The first time you log-in, you might need to try several times by refreshing the page, until it works for you!)
19 -1. Navigate to "Contributed-Notebooks" folder, which offers user-specific persistent storage.
20 -1. Upload and unzip there [[SimulateWithEBRAINS.zip>>path:https://wiki.ebrains.eu/bin/download/Collabs/tvb-multiscale-cosim-mcgillsummerschool/Simulate%20with%20EBRAINS%20TVB-multiscale%20workshop%20presentation/WebHome/SimulateWithEBRAINS.zip?rev=1.1]] by running
21 -unzip SimulateWithEBRAINS.zip
22 -on a terminal, or
23 -! unzip SimulateWithEBRAINS.zip
24 -in a notebook.
25 -1. Run the TVB-corr-cortex-opt.ipynb notebook for TVB-ANNarchy cosimulation and the ANNarchy-spiking-cortex.ipynb one for ANNarchy only simulation.
24 +1. Navigate to "TVB-Multiscale-Examples/notebooks" folder, and copy its contents to the "Contributed-Notebooks" folder, which offers user-specific persistent storage.
25 +1. Run the TVB-ANNarchy_DBS_BasalGanglia.ipynb notebook for TVB-ANNarchy DBS Co-Simulation and TVB-NETPYNE_RedWongWang.ipynb for the TVB-NETPYNE Co-Simulation
2022-11-09_TVB-multiscale_SimulateWIthEbrains.pdf
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SimulateWithEBRAINS.jpg
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SimulateWithEBRAINS.zip
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2022-11-24_TVB-multiscale_CodeJam2022.pdf
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Ebrains_TVB-NetPyNE_slides.pdf
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