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Changes for page EBRAINS_CodeJam2022

Last modified by dionperd on 2024/04/08 12:55
From version 21.1
edited by dionperd
on 2022/11/22 16:54
Change comment: Uploaded new attachment "Ebrains_TVB-NetPyNE_slides.pdf", version 1.1
To version 23.1
edited by dionperd
on 2022/11/22 17:09
Change comment: There is no comment for this version

Summary

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1 1  
2 2  
3 +(% class="box" style="text-align: center;" %)
4 +(((
5 +**HBP/EBRAINS CodeJam2022**
6 +)))
7 +
3 3  (% style="text-align: center;" %)
4 -== **TVB-Multiscale: Deep Brain Stimulation use case demonstration** ==
9 +=== **TVB-Multiscale: Deep Brain Stimulation use case demonstration** ===
5 5  
6 6  (% style="text-align: center;" %)
7 -== **&** ==
12 +=== **&** ===
8 8  
9 9  (% style="text-align: center;" %)
10 -== **TVB-NETPYNE demonstration** ==
15 +=== **TVB-NETPYNE demonstration** ===
11 11  
12 12  November 24th, 2022
13 13  
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15 15  
16 16  === What can I find here? ===
17 17  
18 -* [[Presentation slides>>attach:2022-11-09_TVB-multiscale_SimulateWIthEbrains.pdf]] from the workshop's lecture.
19 -* The notebook ([[SimulateWithEBRAINS.zip>>path:https://wiki.ebrains.eu/bin/download/Collabs/tvb-multiscale-cosim-mcgillsummerschool/Simulate%20with%20EBRAINS%20TVB-multiscale%20workshop%20presentation/WebHome/SimulateWithEBRAINS.zip?rev=1.1]]) demonstrated during the workshop.
23 +* Presentation slides for the [[TVB-Multiscale and for DBS demonstration with TVB-ANNarchy>>attach:2022-11-24_TVB-multiscale_CodeJam2022.pdf]].
24 +* Presentation slides for the [[TVB-NETPYNE demonstration>>attach:Ebrains_TVB-NetPyNE_slides.pdf]].
20 20  
21 21  === Guide to run the use-case notebooks ===
22 22  
23 23  1. Run the EBRAINS TVB-Multiscale app by browsing to [[https:~~/~~/tvb-multiscale.apps.hbp.eu/>>url:https://tvb-multiscale.apps.hbp.eu/]] and logging in with your EBRAINS account. (The first time you log-in, you might need to try several times by refreshing the page, until it works for you!)
24 -1. Navigate to "Contributed-Notebooks" folder, which offers user-specific persistent storage.
25 -1. Upload and unzip there [[SimulateWithEBRAINS.zip>>path:https://wiki.ebrains.eu/bin/download/Collabs/tvb-multiscale-cosim-mcgillsummerschool/Simulate%20with%20EBRAINS%20TVB-multiscale%20workshop%20presentation/WebHome/SimulateWithEBRAINS.zip?rev=1.1]] by running
26 -unzip SimulateWithEBRAINS.zip
27 -on a terminal, or
28 -! unzip SimulateWithEBRAINS.zip
29 -in a notebook.
30 -1. Run the TVB-corr-cortex-opt.ipynb notebook for TVB-ANNarchy cosimulation and the ANNarchy-spiking-cortex.ipynb one for ANNarchy only simulation.
29 +1. Navigate to "TVB-Multiscale-Examples/notebooks" folder, and copy its contents to the "Contributed-Notebooks" folder, which offers user-specific persistent storage.
30 +1. Run the TVB-ANNarchy_DBS_BasalGanglia.ipynb notebook for TVB-ANNarchy DBS Co-Simulation and TVB-NETPYNE_RedWongWang.ipynb for the TVB-NETPYNE Co-Simulation