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Changes for page EBRAINS_CodeJam2022

Last modified by dionperd on 2024/04/08 12:55
From version 23.1
edited by dionperd
on 2022/11/22 17:09
Change comment: There is no comment for this version
To version 19.1
edited by dionperd
on 2022/11/22 16:53
Change comment: Deleted image "SimulateWithEBRAINS.jpg"

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1 1  
2 2  
3 -(% class="box" style="text-align: center;" %)
4 -(((
5 -**HBP/EBRAINS CodeJam2022**
6 -)))
7 -
8 8  (% style="text-align: center;" %)
9 -=== **TVB-Multiscale: Deep Brain Stimulation use case demonstration** ===
4 +== **TVB-Multiscale: Deep Brain Stimulation use case demonstration** ==
10 10  
11 11  (% style="text-align: center;" %)
12 -=== **&** ===
7 +== **&** ==
13 13  
14 14  (% style="text-align: center;" %)
15 -=== **TVB-NETPYNE demonstration** ===
10 +== **TVB-NETPYNE demonstration** ==
16 16  
17 17  November 24th, 2022
18 18  
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20 20  
21 21  === What can I find here? ===
22 22  
23 -* Presentation slides for the [[TVB-Multiscale and for DBS demonstration with TVB-ANNarchy>>attach:2022-11-24_TVB-multiscale_CodeJam2022.pdf]].
24 -* Presentation slides for the [[TVB-NETPYNE demonstration>>attach:Ebrains_TVB-NetPyNE_slides.pdf]].
18 +* [[Presentation slides>>attach:2022-11-09_TVB-multiscale_SimulateWIthEbrains.pdf]] from the workshop's lecture.
19 +* The notebook ([[SimulateWithEBRAINS.zip>>path:https://wiki.ebrains.eu/bin/download/Collabs/tvb-multiscale-cosim-mcgillsummerschool/Simulate%20with%20EBRAINS%20TVB-multiscale%20workshop%20presentation/WebHome/SimulateWithEBRAINS.zip?rev=1.1]]) demonstrated during the workshop.
25 25  
26 26  === Guide to run the use-case notebooks ===
27 27  
28 28  1. Run the EBRAINS TVB-Multiscale app by browsing to [[https:~~/~~/tvb-multiscale.apps.hbp.eu/>>url:https://tvb-multiscale.apps.hbp.eu/]] and logging in with your EBRAINS account. (The first time you log-in, you might need to try several times by refreshing the page, until it works for you!)
29 -1. Navigate to "TVB-Multiscale-Examples/notebooks" folder, and copy its contents to the "Contributed-Notebooks" folder, which offers user-specific persistent storage.
30 -1. Run the TVB-ANNarchy_DBS_BasalGanglia.ipynb notebook for TVB-ANNarchy DBS Co-Simulation and TVB-NETPYNE_RedWongWang.ipynb for the TVB-NETPYNE Co-Simulation
24 +1. Navigate to "Contributed-Notebooks" folder, which offers user-specific persistent storage.
25 +1. Upload and unzip there [[SimulateWithEBRAINS.zip>>path:https://wiki.ebrains.eu/bin/download/Collabs/tvb-multiscale-cosim-mcgillsummerschool/Simulate%20with%20EBRAINS%20TVB-multiscale%20workshop%20presentation/WebHome/SimulateWithEBRAINS.zip?rev=1.1]] by running
26 +unzip SimulateWithEBRAINS.zip
27 +on a terminal, or
28 +! unzip SimulateWithEBRAINS.zip
29 +in a notebook.
30 +1. Run the TVB-corr-cortex-opt.ipynb notebook for TVB-ANNarchy cosimulation and the ANNarchy-spiking-cortex.ipynb one for ANNarchy only simulation.
2022-11-24_TVB-multiscale_CodeJam2022.pdf
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Ebrains_TVB-NetPyNE_slides.pdf
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