Attention: The EBRAINS IAM will be down Monday, the 21st July 2025, from 17.00 CEST (my timezone) for up to 1 hour. This will any affect services requiring an EBRAINS login, we apologise for any inconvenience caused.


Changes for page EBRAINS_CodeJam2022

Last modified by dionperd on 2024/04/08 12:55
From version 31.1
edited by dionperd
on 2024/04/08 12:52
Change comment: There is no comment for this version
To version 1.1
edited by dionperd
on 2022/11/08 15:53
Change comment: There is no comment for this version

Summary

Details

Page properties
Title
... ... @@ -1,1 +1,1 @@
1 -EBRAINS_CodeJam2022
1 +Simulate with EBRAINS TVB-multiscale workshop presentation
Content
... ... @@ -1,27 +1,0 @@
1 -
2 -
3 -(% class="box" style="text-align: center;" %)
4 -(((
5 -[[**HBP/EBRAINS CodeJam2022**>>https://www.humanbrainproject.eu/en/follow-hbp/events/ebrainshbp-codejam-codejam-12]]
6 -)))
7 -
8 -(% style="text-align: center;" %)
9 -=== **TVB-Multiscale: Deep Brain Stimulation TVB-ANNarchy use case demonstration & TVB-NETPYNE demonstration** ===
10 -
11 -November 24th, 2022
12 -
13 -== ==
14 -
15 -== (% style="color:#e74c3c" %)**TVB-multiscale JupyterHub apps are now deprecated! See:**(%%) **[[https:~~/~~/wiki.ebrains.eu/bin/view/Collabs/the-virtual-brain-multiscale/>>url:https://wiki.ebrains.eu/bin/view/Collabs/the-virtual-brain-multiscale/]] (% style="color:#e74c3c" %)about how to run TVB-multiscale (TVB-NEST, TVB-NetPyNE (NEURON), TVB-ANNarchy) on EBRAINS!(%%)** ==
16 -
17 -
18 -=== What can I find here? ===
19 -
20 -* Presentation slides for the [[TVB-Multiscale and for DBS demonstration with TVB-ANNarchy>>attach:2022-11-24_TVB-multiscale_CodeJam2022.pdf]].
21 -* Presentation slides for the [[TVB-NETPYNE demonstration>>attach:Ebrains_TVB-NetPyNE_slides.pdf]].
22 -
23 -=== Guide to run the use-case notebooks ===
24 -
25 -1. Run the EBRAINS TVB-Multiscale app by browsing to [[https:~~/~~/tvb-multiscale.apps.hbp.eu/>>url:https://tvb-multiscale.apps.hbp.eu/]] and logging in with your EBRAINS account. (The first time you log-in, you might need to try several times by refreshing the page, until it works for you!)
26 -1. Navigate to "TVB-Multiscale-Examples/notebooks" folder, and copy its contents to the "Contributed-Notebooks" folder, which offers user-specific persistent storage.
27 -1. Run the TVB-ANNarchy_DBS_BasalGanglia.ipynb notebook for TVB-ANNarchy DBS Co-Simulation and TVB-NETPYNE_RedWongWang.ipynb for the TVB-NETPYNE Co-Simulation
2022-11-24_TVB-multiscale_CodeJam2022.pdf
Author
... ... @@ -1,1 +1,0 @@
1 -XWiki.dionperd
Size
... ... @@ -1,1 +1,0 @@
1 -15.1 MB
Content
Ebrains_TVB-NetPyNE_slides.pdf
Author
... ... @@ -1,1 +1,0 @@
1 -XWiki.dionperd
Size
... ... @@ -1,1 +1,0 @@
1 -3.1 MB
Content