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Changes for page EBRAINS_CodeJam2022

Last modified by dionperd on 2024/04/08 12:55
From version 32.1
edited by dionperd
on 2024/04/08 12:55
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To version 7.1
edited by dionperd
on 2022/11/08 15:58
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Summary

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1 -EBRAINS_CodeJam2022
1 +Simulate with EBRAINS TVB-multiscale workshop presentation
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1 -
1 +[[image:SimulateWithEBRAINS.jpg]]
2 2  
3 -(% class="box" style="text-align: center;" %)
4 -(((
5 -[[**HBP/EBRAINS CodeJam2022**>>https://www.humanbrainproject.eu/en/follow-hbp/events/ebrainshbp-codejam-codejam-12]]
6 -)))
7 7  
8 -(% style="text-align: center;" %)
9 -=== **TVB-Multiscale: Deep Brain Stimulation TVB-ANNarchy use case demonstration & TVB-NETPYNE demonstration** ===
10 10  
11 -November 24th, 2022
5 +== **TVB-Multiscale: Deep Brain Stimulation use case demonstration** ==
12 12  
13 -== ==
7 +November 9th, 2022
14 14  
15 -(% class="wikigeneratedid" id="HTVB-multiscaleJupyterHubappsarenowdeprecated21See:A0https:2F2Fwiki.ebrains.eu2Fbin2Fview2FCollabs2Fthe-virtual-brain-multiscale2FA0abouthowtorunTVB-multiscale28TVB-NEST2CTVB-NetPyNE28NEURON292CTVB-ANNarchy29onEBRAINS21" %)
16 -(% style="color:#e74c3c" %)**TVB-multiscale JupyterHub apps are now deprecated! See:**(%%) **[[https:~~/~~/wiki.ebrains.eu/bin/view/Collabs/the-virtual-brain-multiscale/>>url:https://wiki.ebrains.eu/bin/view/Collabs/the-virtual-brain-multiscale/]] (% style="color:#e74c3c" %)about how to run TVB-multiscale (TVB-NEST, TVB-NetPyNE (NEURON), TVB-ANNarchy) on EBRAINS!(%%)**
17 17  
18 18  
19 19  === What can I find here? ===
20 20  
21 -* Presentation slides for the [[TVB-Multiscale and for DBS demonstration with TVB-ANNarchy>>attach:2022-11-24_TVB-multiscale_CodeJam2022.pdf]].
22 -* Presentation slides for the [[TVB-NETPYNE demonstration>>attach:Ebrains_TVB-NetPyNE_slides.pdf]].
13 +* Presentation slides from the workshop's lecture.
14 +* The notebook ([[SimulateWithEBRAINS.zip>>path:https://wiki.ebrains.eu/bin/download/Collabs/tvb-multiscale-cosim-mcgillsummerschool/Simulate%20with%20EBRAINS%20TVB-multiscale%20workshop%20presentation/WebHome/SimulateWithEBRAINS.zip?rev=1.1]]) demonstrated during the workshop.
23 23  
24 -=== Guide to run the use-case notebooks ===
16 +=== Guide to run the use-case notebook ===
25 25  
26 26  1. Run the EBRAINS TVB-Multiscale app by browsing to [[https:~~/~~/tvb-multiscale.apps.hbp.eu/>>url:https://tvb-multiscale.apps.hbp.eu/]] and logging in with your EBRAINS account. (The first time you log-in, you might need to try several times by refreshing the page, until it works for you!)
27 -1. Navigate to "TVB-Multiscale-Examples/notebooks" folder, and copy its contents to the "Contributed-Notebooks" folder, which offers user-specific persistent storage.
28 -1. Run the TVB-ANNarchy_DBS_BasalGanglia.ipynb notebook for TVB-ANNarchy DBS Co-Simulation and TVB-NETPYNE_RedWongWang.ipynb for the TVB-NETPYNE Co-Simulation
19 +1. Navigate to "Contributed-Notebooks" folder, which offers user-specific persistent storage.
20 +1. Upload and unzip there [[SimulateWithEBRAINS.zip>>path:https://wiki.ebrains.eu/bin/download/Collabs/tvb-multiscale-cosim-mcgillsummerschool/Simulate%20with%20EBRAINS%20TVB-multiscale%20workshop%20presentation/WebHome/SimulateWithEBRAINS.zip?rev=1.1]] by starting a terminal session or a new notebook and running unzip SimulateWithEBRAINS.zip
21 +1. Run the TVB-corr-cortex-opt.ipynb notebook for TVB-ANNarchy cosimulation and the ANNarchy-spiking-cortex.ipynb one for ANNarchy only simulation.
2022-11-24_TVB-multiscale_CodeJam2022.pdf
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1 -XWiki.dionperd
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Ebrains_TVB-NetPyNE_slides.pdf
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1 -XWiki.dionperd
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1 -3.1 MB
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SimulateWithEBRAINS.jpg
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1 +XWiki.dionperd
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1 +17.0 MB
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SimulateWithEBRAINS.zip
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1 +XWiki.dionperd
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