Warning:  Due to planned infrastructure maintenance, the EBRAINS Wiki and EBRAINS Support system will be unavailable for up to three days starting Monday, 14 July. During this period, both services will be inaccessible, and any emails sent to the support address will not be received.

Attention: The EBRAINS Chat will down on Thursday, the 10th of July 2025 starting from 18.00pm CEST (my timezone) for up to 1 hour. 

Warning: The EBRAINS Drive, EBRAINS Bucket and EBRAINS Lab will down today, Wednesday, the 9th of July 2025 starting from 19:30 CEST (my timezone) for up to 1 hour.


Changes for page EBRAINS_CodeJam2022

Last modified by dionperd on 2024/04/08 12:55
From version 8.1
edited by dionperd
on 2022/11/08 17:18
Change comment: There is no comment for this version
To version 21.1
edited by dionperd
on 2022/11/22 16:54
Change comment: Uploaded new attachment "Ebrains_TVB-NetPyNE_slides.pdf", version 1.1

Summary

Details

Page properties
Title
... ... @@ -1,1 +1,1 @@
1 -Simulate with EBRAINS TVB-multiscale workshop presentation
1 +EBRAINS_CodeJam2022
Content
... ... @@ -1,21 +1,30 @@
1 -[[image:SimulateWithEBRAINS.jpg]]
1 +
2 2  
3 +(% style="text-align: center;" %)
4 +== **TVB-Multiscale: Deep Brain Stimulation use case demonstration** ==
3 3  
6 +(% style="text-align: center;" %)
7 +== **&** ==
4 4  
5 -== **TVB-Multiscale: Deep Brain Stimulation use case demonstration** ==
9 +(% style="text-align: center;" %)
10 +== **TVB-NETPYNE demonstration** ==
6 6  
7 -November 9th, 2022
12 +November 24th, 2022
8 8  
9 9  
10 10  
11 11  === What can I find here? ===
12 12  
13 -* Presentation slides from the workshop's lecture.
18 +* [[Presentation slides>>attach:2022-11-09_TVB-multiscale_SimulateWIthEbrains.pdf]] from the workshop's lecture.
14 14  * The notebook ([[SimulateWithEBRAINS.zip>>path:https://wiki.ebrains.eu/bin/download/Collabs/tvb-multiscale-cosim-mcgillsummerschool/Simulate%20with%20EBRAINS%20TVB-multiscale%20workshop%20presentation/WebHome/SimulateWithEBRAINS.zip?rev=1.1]]) demonstrated during the workshop.
15 15  
16 -=== Guide to run the use-case notebook ===
21 +=== Guide to run the use-case notebooks ===
17 17  
18 18  1. Run the EBRAINS TVB-Multiscale app by browsing to [[https:~~/~~/tvb-multiscale.apps.hbp.eu/>>url:https://tvb-multiscale.apps.hbp.eu/]] and logging in with your EBRAINS account. (The first time you log-in, you might need to try several times by refreshing the page, until it works for you!)
19 19  1. Navigate to "Contributed-Notebooks" folder, which offers user-specific persistent storage.
20 -1. Upload and unzip there [[SimulateWithEBRAINS.zip>>path:https://wiki.ebrains.eu/bin/download/Collabs/tvb-multiscale-cosim-mcgillsummerschool/Simulate%20with%20EBRAINS%20TVB-multiscale%20workshop%20presentation/WebHome/SimulateWithEBRAINS.zip?rev=1.1]] by starting a terminal session or a new notebook and running unzip SimulateWithEBRAINS.zip (running the command in a notebook requires "!" before the unzip command).
25 +1. Upload and unzip there [[SimulateWithEBRAINS.zip>>path:https://wiki.ebrains.eu/bin/download/Collabs/tvb-multiscale-cosim-mcgillsummerschool/Simulate%20with%20EBRAINS%20TVB-multiscale%20workshop%20presentation/WebHome/SimulateWithEBRAINS.zip?rev=1.1]] by running
26 +unzip SimulateWithEBRAINS.zip
27 +on a terminal, or
28 +! unzip SimulateWithEBRAINS.zip
29 +in a notebook.
21 21  1. Run the TVB-corr-cortex-opt.ipynb notebook for TVB-ANNarchy cosimulation and the ANNarchy-spiking-cortex.ipynb one for ANNarchy only simulation.
SimulateWithEBRAINS.jpg
Author
... ... @@ -1,1 +1,0 @@
1 -XWiki.dionperd
Size
... ... @@ -1,1 +1,0 @@
1 -17.0 MB
Content
SimulateWithEBRAINS.zip
Author
... ... @@ -1,1 +1,0 @@
1 -XWiki.dionperd
Size
... ... @@ -1,1 +1,0 @@
1 -17.0 MB
Content
2022-11-24_TVB-multiscale_CodeJam2022.pdf
Author
... ... @@ -1,0 +1,1 @@
1 +XWiki.dionperd
Size
... ... @@ -1,0 +1,1 @@
1 +15.1 MB
Content
Ebrains_TVB-NetPyNE_slides.pdf
Author
... ... @@ -1,0 +1,1 @@
1 +XWiki.dionperd
Size
... ... @@ -1,0 +1,1 @@
1 +3.1 MB
Content