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EBRAINS_CodeJam2022

Version 16.1 by dionperd on 2022/11/22 16:53

 

TVB-Multiscale: Deep Brain Stimulation use case demonstration

&

TVB-NETPYNE demonstration

November 24th, 2022

What can I find here?

Guide to run the use-case notebooks

  1. Run the EBRAINS TVB-Multiscale app by browsing to https://tvb-multiscale.apps.hbp.eu/ and logging in with your EBRAINS account. (The first time you log-in, you might need to try several times by refreshing the page, until it works for you!)
  2. Navigate to "Contributed-Notebooks" folder, which offers user-specific persistent storage.
  3. Upload and unzip there SimulateWithEBRAINS.zip by running
    unzip SimulateWithEBRAINS.zip
    on a terminal, or
    ! unzip SimulateWithEBRAINS.zip
    in a notebook.
  4. Run the TVB-corr-cortex-opt.ipynb notebook for TVB-ANNarchy cosimulation and the ANNarchy-spiking-cortex.ipynb one for ANNarchy only simulation.