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Wiki source code of EBRAINS_CodeJam2022

Last modified by dionperd on 2024/04/08 12:55
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dionperd 16.1 1
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dionperd 23.1 3 (% class="box" style="text-align: center;" %)
4 (((
dionperd 25.1 5 [[**HBP/EBRAINS CodeJam2022**>>https://www.humanbrainproject.eu/en/follow-hbp/events/ebrainshbp-codejam-codejam-12]]
dionperd 23.1 6 )))
7
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dionperd 28.1 9 === **TVB-Multiscale: Deep Brain Stimulation TVB-ANNarchy use case demonstration & TVB-NETPYNE demonstration** ===
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dionperd 16.1 11 November 24th, 2022
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dionperd 31.1 13 == ==
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dionperd 32.1 15 (% class="wikigeneratedid" id="HTVB-multiscaleJupyterHubappsarenowdeprecated21See:A0https:2F2Fwiki.ebrains.eu2Fbin2Fview2FCollabs2Fthe-virtual-brain-multiscale2FA0abouthowtorunTVB-multiscale28TVB-NEST2CTVB-NetPyNE28NEURON292CTVB-ANNarchy29onEBRAINS21" %)
16 (% style="color:#e74c3c" %)**TVB-multiscale JupyterHub apps are now deprecated! See:**(%%) **[[https:~~/~~/wiki.ebrains.eu/bin/view/Collabs/the-virtual-brain-multiscale/>>url:https://wiki.ebrains.eu/bin/view/Collabs/the-virtual-brain-multiscale/]] (% style="color:#e74c3c" %)about how to run TVB-multiscale (TVB-NEST, TVB-NetPyNE (NEURON), TVB-ANNarchy) on EBRAINS!(%%)**
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dionperd 31.1 18
dionperd 2.1 19 === What can I find here? ===
20
dionperd 22.1 21 * Presentation slides for the [[TVB-Multiscale and for DBS demonstration with TVB-ANNarchy>>attach:2022-11-24_TVB-multiscale_CodeJam2022.pdf]].
22 * Presentation slides for the [[TVB-NETPYNE demonstration>>attach:Ebrains_TVB-NetPyNE_slides.pdf]].
dionperd 2.1 23
dionperd 15.1 24 === Guide to run the use-case notebooks ===
dionperd 2.1 25
26 1. Run the EBRAINS TVB-Multiscale app by browsing to [[https:~~/~~/tvb-multiscale.apps.hbp.eu/>>url:https://tvb-multiscale.apps.hbp.eu/]] and logging in with your EBRAINS account. (The first time you log-in, you might need to try several times by refreshing the page, until it works for you!)
dionperd 22.1 27 1. Navigate to "TVB-Multiscale-Examples/notebooks" folder, and copy its contents to the "Contributed-Notebooks" folder, which offers user-specific persistent storage.
28 1. Run the TVB-ANNarchy_DBS_BasalGanglia.ipynb notebook for TVB-ANNarchy DBS Co-Simulation and TVB-NETPYNE_RedWongWang.ipynb for the TVB-NETPYNE Co-Simulation