Last modified by dionperd on 2024/04/08 12:54
Show last authors
1 == ==
2
3 [[image:https://www.brainsimulation.org/bsw/img/9812/text_illustration_maxi@2x||alt="INCF assembly 2022 banner"]]
4
5
6 (% style="line-height:1.3800000000000001" %)
7 (% style="color:#000000; font-family:Arial; font-size:11pt; font-style:normal; font-variant:normal; font-weight:700; text-decoration:none; white-space:pre-wrap" %)**Title: Enabling multilevel data integration: Turning data to knowledge**
8
9 (% style="line-height:1.3800000000000001" %)
10 (% style="color:#000000; font-family:Arial; font-size:11pt; font-style:normal; font-variant:normal; font-weight:700; text-decoration:none; white-space:pre-wrap" %)**Chair: Hosted by NFDI-Neuro **
11
12 (% style="line-height:1.3800000000000001" %)
13 (% style="color:#000000; font-family:Arial; font-size:11pt; font-style:normal; font-variant:normal; font-weight:700; text-decoration:none; white-space:pre-wrap" %)**Date: Sept-15, 2022**
14
15 (% style="line-height:1.3800000000000001" %)
16 (% style="color:#000000; font-family:Arial; font-size:11pt; font-style:normal; font-variant:normal; font-weight:700; text-decoration:none; white-space:pre-wrap" %)**Location: Online**
17
18 (% style="line-height:1.3800000000000001" %)
19 (% style="color:#000000; font-family:Arial; font-size:11pt; font-style:normal; font-variant:normal; font-weight:700; text-decoration:none; white-space:pre-wrap" %)**Link: **(%%)[[(% style="font-size:12pt; font-variant:normal; white-space:pre-wrap" %)__https:~~/~~/neuroinformatics.incf.org/2022/program__>>url:https://neuroinformatics.incf.org/2022/program||style="text-decoration:none"]]
20
21
22 (% class="wikigeneratedid" id="HTVB-multiscaleJupyterHubappsarenowdeprecated21See:A0https:2F2Fwiki.ebrains.eu2Fbin2Fview2FCollabs2Fthe-virtual-brain-multiscale2FA0abouthowtorunTVB-multiscale28TVB-NEST2CTVB-NetPyNE28NEURON292CTVB-ANNarchy29onEBRAINS21" %)
23 (% style="color:#e74c3c" %)**TVB-multiscale JupyterHub apps are now deprecated! See:**(%%) **[[https:~~/~~/wiki.ebrains.eu/bin/view/Collabs/the-virtual-brain-multiscale/>>url:https://wiki.ebrains.eu/bin/view/Collabs/the-virtual-brain-multiscale/]] (% style="color:#e74c3c" %)about how to run TVB-multiscale (TVB-NEST, TVB-NetPyNE (NEURON), TVB-ANNarchy) on EBRAINS!(%%)**
24
25
26 === What can I find here? ===
27
28 [[Presentation slides>>attach:2022-09-15_TVB-multiscale_INCF.pdf]] and [[hands-on materials>>attach:WilsonCowan.ipynb]] for the sessions:
29
30 * 14:40 - 15:15 (CEST): Multi-scale co-simulation of a brain model by Dionysios Perdikis (Charité)
31 * 15:15 - 16:00 (CEST): Hands-on: Setup a multiscale co-simulation and tune the interface between scales by Dionysios Perdikis (Charité)
32
33 === Guide to run the use-case notebook ===
34
35 1. Run the EBRAINS TVB-Multiscale app by browsing to [[https:~~/~~/tvb-multiscale.apps.hbp.eu/>>https://tvb-multiscale.apps.hbp.eu/]] and logging in with your EBRAINS account. (The first time you log-in, you might need to try several times by refreshing the page, until it works for you!)
36 1. Navigate to "TVB-Multiscale-Examples/documented_example_notebooks" folder, and upload the [[WilsonCowan.ipynb notebook>>attach:WilsonCowan.ipynb]], to the "Contributed-Notebooks" folder, which offers user-specific persistent storage.
37 1. Run the WilsonCowan.ipynb notebook.
38
39 == ==