Wiki source code of Simulate with EBRAINS TVB-multiscale workshop presentation (November 2022)
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20.1 | 1 | == [[image:SimulateWithEBRAINS.jpg]] == |
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2.1 | 4 | (% class="wikigeneratedid" id="HTheVirtualBraininClinicalResearch:AnIntroduction.Charite2CA0June28th2C2022toSeptember13th2C2022" %) |
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20.1 | 5 | **TVB-Multiscale: Deep Brain Stimulation use case demonstration** |
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1.1 | 7 | (% class="wikigeneratedid" %) |
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20.1 | 8 | November 9th, 2022 |
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7.1 | 12 | === What can I find here? === |
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20.1 | 14 | * Presentation slides from the workshop's lecture. |
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24.1 | 15 | * The notebook ([[SimulateWithEBRAINS.zip>>attach:SimulateWithEBRAINS.zip]]) demonstrated during the workshop. |
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8.1 | 17 | === Guide to run the use-case notebook === |
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18.1 | 19 | 1. Run the EBRAINS TVB-Multiscale app by browsing to [[https:~~/~~/tvb-multiscale.apps.hbp.eu/>>https://tvb-multiscale.apps.hbp.eu/]] and logging in with your EBRAINS account. (The first time you log-in, you might need to try several times by refreshing the page, until it works for you!) |
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20.1 | 20 | 1. Navigate to "Contributed-Notebooks" folder, which offers user-specific persistent storage. |
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24.1 | 21 | 1. Upload and unzip there [[SimulateWithEBRAINS.zip>>attach:SimulateWithEBRAINS.zip]] by starting a terminal session or a new notebook and running unzip SimulateWithEBRAINS.zip |
| 22 | 1. Run the TVB-corr-cortex-opt.ipynb notebook for TVB-ANNarchy cosimulation and the ANNarchy-spiking-cortex.ipynb one for ANNarchy only simulation. | ||
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16.1 | 24 | == == |