Attention: Due to an upgrade beginning on Friday, the 22nd August 2025, any new collabs, groups and any changes to teams will not be kept beyond the weekend. User creation will also be disabled during this time. The actual upgrade will take place on Wednesday, 27th August. On that day, any service requiring a Keycloak login will be unavailable for the duration of the upgrade. Thank you for your understanding as we complete this important work.

The Wiki service will be temporarily unavailable for scheduled maintenance on Friday, August 22nd, 2025, starting at 12:30 CEST up to 1H.

Following the system restart, the Collaboration and Group creation features will be temporarily disabled and will return HTTP 503 Service Unavailable errors until further notice.


INCF Neuroinformatics Assembly 2022 training workshop. Enabling multi-scale data integration: Turning data to knowledge.

Last modified by dionperd on 2024/04/08 12:54

INCF assembly 2022 banner

Title: Enabling multilevel data integration: Turning data to knowledge

Chair: Hosted by NFDI-Neuro 

Date: Sept-15, 2022

Location: Online

Link: https://neuroinformatics.incf.org/2022/program

TVB-multiscale JupyterHub apps are now deprecated! See: https://wiki.ebrains.eu/bin/view/Collabs/the-virtual-brain-multiscale/ about how to run TVB-multiscale (TVB-NEST, TVB-NetPyNE (NEURON), TVB-ANNarchy) on EBRAINS!

What can I find here?

Presentation slides and hands-on materials for the sessions:

  • 14:40 - 15:15 (CEST): Multi-scale co-simulation of a brain model by Dionysios Perdikis (Charité)
  • 15:15 - 16:00 (CEST): Hands-on: Setup a multiscale co-simulation and tune the interface between scales by Dionysios Perdikis (Charité)

Guide to run the use-case notebook

  1. Run the EBRAINS TVB-Multiscale app by browsing to https://tvb-multiscale.apps.hbp.eu/ and logging in with your EBRAINS account. (The first time you log-in, you might need to try several times by refreshing the page, until it works for you!)
  2. Navigate to "TVB-Multiscale-Examples/documented_example_notebooks" folder, and upload the WilsonCowan.ipynb notebook, to the "Contributed-Notebooks" folder, which offers user-specific persistent storage.
  3. Run the WilsonCowan.ipynb notebook.